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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1325s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 38834.6 Da PI: 8.2624 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.6 | 8.4e-56 | 14 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL kkv +++++ ++i+evd++k+ePw+Lp k+k +ekewyfF rd+ky+tg r+nrat++gyWkatg SapurV1A.1325s0010.1.p 14 LPPGFRFHPTDEELITYYLLKKVLDSNFTG-RAIAEVDLNKCEPWELPGKAKMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKATG 99 79*************************999.89***************99999********************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 kd+e++s+ +g+lvg+kktLvfy+grapkgek++Wvmheyrle SapurV1A.1325s0010.1.p 100 KDREIYSSkTGALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 142 ******9867888****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-63 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.413 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MESYHHFDCG DANLPPGFRF HPTDEELITY YLLKKVLDSN FTGRAIAEVD LNKCEPWELP 60 GKAKMGEKEW YFFNLRDRKY PTGLRTNRAT EAGYWKATGK DREIYSSKTG ALVGMKKTLV 120 FYRGRAPKGE KSNWVMHEYR LEGKFAYHYL SRCSKDEWVI SRVFQKSCSG AAISGSGSAP 180 KKNRFNTTIN LYPEAGSPSS VSLPPLLDAT TAASNSTLND RDSCSYDSHT QHEHVSCFST 240 IAAAASAAAK YNNNNFDLAT LPPPQMADSF SRFPRNTGPT SFPSLRSLQE NLQLPFFFPS 300 PPSAVAGPPF HGGGTAMSWM MNPEEGRVDG SGAGGRVTMG PTELDCMWTY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 13 | 170 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 13 | 170 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 13 | 170 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 13 | 170 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 13 | 170 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 13 | 170 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029527.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 2 | ||||
Swissprot | O04017 | 1e-116 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | B9HZR2 | 0.0 | B9HZR2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s11600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3689 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-108 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1325s0010.1.p |